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Genotyping experiment 2007BOPA2_AB_Plate5

Description

Experiment Short NameUSDA-Aberdeen samples
PlatformGoldenGate
Data ProgramUSDA-ARS Fargo, ND (NDG)
Breeding ProgramUSDA Aberdeen (AB)
OPA NameBOPA2
Processing Date8/14/2008
SoftwareIllumina GenomeStudio
Software version2010.3
Comments

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1536 markers were assayed for 96 lines.
(lines and markers)

Removed by filteringRemaining
694 markers have a minor allele frequency (MAF) less than 5%
119 markers are missing more than 10% of data
703 markers removed
833 markers

Maximum Missing Data: %     Minimum MAF: %    



Additional files available

Samples (germplasm lines)Sample_Sheet_2007plate5AB_OPA2.csv
Manifest (markers used)GS0010598-OPA.opa
Cluster File2007plate1-10OPA2_092608.EGT
Raw dataBOPA2_2007_4359150063.zip

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

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