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  T3 Barley Sandbox

Genotyping experiment 2007BOPA1_N6_Plate9

Description

Experiment Short NameNDSU 6 row samples
PlatformGoldenGate
Data ProgramUSDA-ARS Fargo, ND (NDG)
Breeding ProgramNorth Dakota State (NDSU 6-Row) (N6)
OPA NameBOPA1
Processing Date4/16/2008
SoftwareIllumina GenomeStudio
Software version2010.3
Comments

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1536 markers were assayed for 96 lines.
(lines and markers)

Removed by filteringRemaining
1050 markers have a minor allele frequency (MAF) less than 5%
91 markers are missing more than 10% of data
1053 markers removed
483 markers

Maximum Missing Data: %     Minimum MAF: %    



Additional files available

Samples (germplasm lines)Sample_Sheet_2007plate9NDSU6.csv
Manifest (markers used)GS0007511-OPA.opa
Cluster File2007BOPA1_26april08.EGT
Raw dataBOPA1_2007_4018208039.zip

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

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