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  T3 Barley Sandbox

Genotyping experiment 2007BOPA1_MN_PRECAP


Experiment Short NameMN_PRECAP
Data ProgramUSDA-ARS Fargo, ND (NDG)
Breeding ProgramUniversity of Minnesota - Agronomy (MN)
Processing Date12/18/2007
SoftwareIllumina Genome Studio
Software versionunknown
CommentsMN breeding program yield trial lines from the pre-Barley CAP years 2003-2005; BOPA1 SNP assay


1454 markers were assayed for 241 lines.
(lines and markers)

Removed by filteringRemaining
725 markers have a minor allele frequency (MAF) less than 5%
0 markers are missing more than 10% of data
725 markers removed
729 markers

Maximum Missing Data: %     Minimum MAF: %    

Additional files available

Samples (germplasm lines)Sample_Sheet_OPA1Kevin.csv
Manifest (markers used)GS0007511-OPA.opa
Cluster FileBOPA1revJan2010.EGT
Raw data

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

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