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  T3 Barley Sandbox

Genotyping experiment 2006BOPA1_UT_Plate6

Description

Experiment Short NameUT_Plate6
PlatformGoldenGate
Data ProgramUSDA-ARS Fargo, ND (NDG)
Breeding ProgramUtah State (UT)
OPA NameBOPA1
Processing Date1/27/10
SoftwareIllumina Genome Studio
Software version2010.3
CommentsThis is a re-collection of data performed in 2010 after the original data collected was determined to be of poor quality.

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1536 markers were assayed for 96 lines.
(lines and markers)

Removed by filteringRemaining
431 markers have a minor allele frequency (MAF) less than 5%
131 markers are missing more than 10% of data
441 markers removed
1095 markers

Maximum Missing Data: %     Minimum MAF: %    



Additional files available

Samples (germplasm lines)Sample_Sheet_2006plate6USU.csv
Manifest (markers used)GS0007511-OPA.opa
Cluster File2006OPA1plate6_113007clusterfeb08.EGT
Raw data

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

I agree to the Data Usage Policy as specified in Toronto Statement.