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  T3 Barley Sandbox

Genotyping experiment 2006BOPA1_BA_Plate7

Description

Experiment Short NameBA_Plate7
PlatformGoldenGate
Data ProgramUSDA-ARS Fargo, ND (NDG)
Breeding ProgramBusch Agricultural Resources Inc (BA)
OPA NameBOPA1
Processing Date1/19/2007
SoftwareIllumina GenomeStudio
Software version2010.3
Comments

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1536 markers were assayed for 96 lines.
(lines and markers)

Removed by filteringRemaining
282 markers have a minor allele frequency (MAF) less than 5%
82 markers are missing more than 10% of data
290 markers removed
1246 markers

Maximum Missing Data: %     Minimum MAF: %    



Additional files available

Samples (germplasm lines)Sample_Sheet_2006plate7BARI.csv
Manifest (markers used)GS0007511-OPA.opa
Cluster File2006CAPplate1-10no6_113007cluster.EGT
Raw dataBOPA1_2006_4018208047.zip

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

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