Data Submission
- Data templates are Excel, .txt, or .csv worksheets with column headers for the data T3 requires or accepts.
- The example values can be replaced with your own. Notes about the restrictions for valid data are included in the templates.
- Once populated, the files can be loaded into T3 using the Curate menu, which is available to registered Sandbox users.
- To make updates or corrections, edit your file and reload.
- Please use the wheat
or barley Sandbox database
for test-loading your files. When they're ready,
click here to submit them to the T3 Curator for loading into the official database.
Tutorials
Tutorial1 Register Login
Tutorial2 Line Submission
Tutorial3 Creating line panels
Tutorial4 Phenotype data
Tutorial5 Uploading Marker information
Tutorial6 Creating Marker Panels
Tutorial7 Genotype Experiments and Data
Tutorial8 T3 and Android FieldBook
Data Templates
| Topic | Link | Modified | Contents |
|---|---|---|---|
| Germplasm Lines | Wheat | 06Nov17 | Name, synonyms, pedigree for wheat |
| Barley | 06Nov17 | Name, synonyms, pedigree for barley | |
| Oat | 06Nov17 | Name, synonyms, pedigree for oat | |
| Genetic Characters | 13Aug14 | Genes, QTLs, trait-linked markers, market class | |
| Name conversion macros | 29Sep11 | Excel spreadsheet to convert germplasm names to T3 formatted names. | |
| Phenotyping | Traits | 16Sep11 | Please discuss with the curators before adding a new trait. |
| Trial description | 25Apr16 | Location, planting date, experimental design... | |
| Trial means | 03Dec15 | Values for all traits for test lines and checks, summary statistics | |
| Plot-Level Results | 30Jul13 | Trait values for each plot | |
| Fieldbook | 25Jun13 | Field map | |
| Canopy Spectral Reflectance | CSR System | 16Feb13 | Instrument annotation | CSR description | 27Feb13 | Description of the CSR experiment |
| CSR results | 03Jan13 | Data file format | |
| Genotyping | Experiment description | 30Sep13 | Platform, software, manifest file, experiment details... |
| Line translation | 17Apr12 | Line Name and Trial Code | |
| Illumina data | 03Jan13 | alleles for lines and markers (coded as A or B) | |
| GBS data | 11Apr14 | alleles for lines and markers (coded as ACTG, N = missing, H = heterozygous) | |
| GBS data, over 100K markers | 07Nov14 | instructions for loading large GBS data sets using the command line | |
| DArT data | 25Jun13 | alleles for lines and markers (coded as 1 = present, 0 = absent) | |
| Experiment results (1D) | 16Sep11 | 1D table of alleles for lines and markers | |
| Markers | Sequence Generic | 24Feb14 | Marker sequences and allele definitions |
| Sequence Illumina OPA | 16Sep11 | Markers from Illumina Manifest, Golden Gate OPA format | |
| Sequence Illumina Infinium | 21Aug12 | Markers from Illumina Manifest, Infinium HD format | |
| Markers from DArT | 19Jun13 | Markers from Diversity Array Technologies | |
| Gene function | 04Nov11 | Sequence annotations and name synonyms | |
| Genetic Character markers | 11Dec14 | Trait-linked markers named for their associated gene or QTL | |
| Map location | 16Sep11 | Genetic maps |
In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing.
Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis.
Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto
Statement
I agree to the Data Usage Policy as specified in Toronto Statement.